Structure Websites

PDB provides a text based format for archiving experimentally-determined, three dimensional structures, at the Brookhaven National Laboratory, with list of mirror sites worldwide.

A key for different proteins based on structural features, with keyword search and PDB data, and an entry viewer for download.

Modeling the packing of all 20 amino acid side-chains with one-another and with DNA - from Birkbeck and University Colleges, London.

Archive of online course, with discussion lists, and summary of lecture notes from 1996 at Birkbeck, University of London, UK.

Large scale attempt to determine topology, through collaborative internet based effort, maintained by Millennium Information, Inc., Cambridge, MA.

Compendium of histone protein sequence alignments, including postranslational modifications and proteins containing the histone fold, at the National Human Genome Research Institute, Bethesda, MD.

Analysis of proteins and protein dynamics with hydrogen exchange and mass spectrometry from Corrales, NM.

N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.

Devoted to the modeling of polypeptide structures, aiming to bridge the gap from organic to biochemistry for undergraduates at the University of Pittsburgh, Bradford, PA.

Information regarding histones, histone modifications and their biological roles, and related links.

EPR spectrum of a tyrosyl radical provides information about rotational angle of phenoxyl ring. Database compiled to identify the responsible locus, maintained at the University of Essex, Colchester, England.

Produces neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian glycoproteins. Maintained at the Center for Biological Sequence Analysis, Technical University of Denmark.

Enzymatic activity, sequence, crystallization, 3D structure and links to publications on this enzyme.

Mycobacterium tuberculosis database with information on DNA sequence, map position, structure, and function of proteins. Includes references to a scientific articles.

Introduction to structural biology, its relationship to health, disease and developing new medications. Maintained by the National Institute of General Medical Sciences, Bethesda, Maryland.

A resource on protein kinases, a key class of regulatory proteins. Includes genomic and evolutionary analyses, classification, disease associations and an extensive database of protein kinase genes.

Functional and structural information, based on protein sequence, with link to nomenclature for the signaling cascade genes, maintained at the San Diego Supercomputer Center, CA, USA.

An attempt to classify all proteins to create a unified biological knowledge resource with emphasis on protein and DNA characterization and classification.

Advances and archive of meetings on critical assessment of 3D determination from sequence using alignment tools. Maintained at Lawrence Livermore National Laboratory, California.

Several protein databases including TIMBAL, HOMSTRAD, CREDO, ESST and BIPA including references, maintained by the Department of Biochemistry, University of Cambridge, UK.