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Software Websites

This category is for sites about software aimed primarily at research, evaluation or education in biology. Many branches of Biology have their own category for software which can be reached through the appropriate link. Please submit general-purpose LIMS to the Lab_Computers_and_Software category. Please submit software focused on *clinical* biology to its appropriate category in health or medicine.
1 -

Stat-Ease, Inc.

Statistical software, training, and consulting on Design of Experiments for scientists and engineers. [Windows]
2 -

LemnaTec

Image processing software for biotests (Lemna, Bonit, Daphnia). Distributor for various software firms.
3 -

Biosoft

Programs for data analysis, graphics, and statistics. [Windows]
4 -

Kalaimoscope

Software for finding, measuring, and tracking objects. Includes support for high-level statistical analysis and grid-computing. [Linux]
5 -

MCID Core

Image analysis software solutions for neuroscience, biology, and other life sciences. [Windows]
6 -

SimBiotic Software

Provides a range of interactive software for biology education including virtual labs which simulate real life experiments. [Windows/Mac]
7 -

BioVis3D

Software for reconstructing 3D models from histological serial sections. [Windows]
8 -

Ruro, Inc

Software for research, biotechnology, pharmacology, and healthcare laboratories. [Web-based]
9 -

DNA Dragon

Sequence assembly and editing software for DNA sequences which also processes trace data and next generation sequencing data. [Windows]
10 -

Biodata

Online laboratory management tool that allows researchers to plan, execute, and monitor progress and research data. [Web-based]
11 -

VassarStats

Online software from Vassar College for calculating probability, linear correlation and regression, chi-square, t-procedures, and ANOVA. [Web-based]
12 -

HVS Image

Animal tracking software and related accessories for use with the Morris Water Maze and the Barnes Maze. [Windows]
13 -

MedeaLAB Tracking

Motion analysis system for cells, insects, worms, and particles. [Windows]
14 -

SimThyr

Simulator of thyrotropic feedback control for thyroid homeostasis. [Mac/Windows/Linux]
15 -

HemocyTap

App for manually counting cells using a hemocytometer in culture labs. [iPhone]
16 -

EPath3D

Online package for the diagramming of signaling pathways in biological systems. [Web-based]
17 -

Morpheus

Modeling and simulation environment for multi-scale and multi-cellular systems. [Windows/Mac/Linux]
18 -

AutoDRO + ReadySense

Hardware and software for automating the drosophila climbing assay and sugar preference experiments. [Windows]
19 -

Serf Software Suite

Offers software for immunocytochemistry micrograph analysis, electrophysiology analysis, and genetic data clustering. [Windows]
20 -

FEI: Amira 3D

Software platform for visualizing, manipulating and understanding life science and bio-medical data coming from all types of sources and modalities. [Windows/Linux/Mac]
21 -

MetaSystems

Manufacturer of automatic microscopy imaging systems for research and routine labs.
22 -

Biospecimen Inventory System

BSI-II is customizable specimen inventory management software. [Windows]
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